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Home » Archives for May 2020

May 2020

Archives for May 2020

McFarland Coauthors Paper on Spatially Separated Sexes and Extreme Sex Ratios in Hornwort

May 28, 2020 by artsciweb

Nothoceros aenigmaticus 3040 with labelKenneth McFarland, emeritus greenhouse manager and lecturer in the UT Department of Ecology and Evolutionary Biology, recently co-authored a paper in Frontiers in Plant Science titled “Population Genomics and Phylogeography of a Clonal Bryophyte With Spatially Separated Sexes and Extreme Sex Ratios.”

Sexual reproduction plays an essential role in species’ survival and maintenance. Clonality and other forms of asexual reproduction, however, also exist, especially in plants.

In their study, researchers focused on the southern Appalachian clonal hornwort, Nothoceros aenigmaticus, which grows on rocks near or submerged in streams in watersheds of the Tennessee and Alabama Rivers. This hornwort is a good example of a plant that reproduces asexually and clonally as its male plants seem to produce non-functional sperm cells. It is distributed in southern Appalachia, Mexico, and in “alpine” regions of tropical South America.

“Early bryophyte taxonomists noted the existence of this plant in the Southern Appalachian Mountains, but hesitated naming it for lack of any sexual reproductive structures that would define it as a liverwort or hornwort,” McFarland said. “After these sexual reproduction structures were discovered, it was finally named and classified as a hornwort. This was not the end of the story. The next surprising discovery was that the species had a limited distribution and the two sexes were isolated from each other. “

Unlike elsewhere in its range, male and female plants in the US are geographically separated by ca. 30 km across rivers and mountains, as they grow on rocks in different watersheds of the Tennessee and Alabama Rivers.

“Whether male and female populations were geographically isolated to the extent that migration, and sporadic sexual reproduction was completely absent, and hence whether these populations relied always exclusively on asexual propagation was unknown,” McFarland said. “Resolving this uncertainty is critical to assess the vulnerability of these populations to environmental change.”

To confirm the total reproductive isolation, reconstruct its origin, and assess the mode of reproduction of N. aenigmaticus in southern Appalachia, researchers analyzed genetic data of more than 250 individuals of the species. Nothoceros aenigmaticus likely immigrated to the US from sexual Mexican ancestors about 600–800,000 years ago. The genomic data confirmed the absolute reproductive isolation between sexes and the absolute genetic isolation among southern Appalachian populations.

“The southern Appalachian drainage system is thought to have been remodeled by geological processes during the Pleistocene glaciations, which could have mixed genotypes from contiguous watersheds,” McFarland said.

Populations from contiguous watersheds share clones, but individuals lack mixed genetic traits, consistent with the lack of sexual reproduction, as is their overall reduced genetic diversity. This low extant genetic diversity and the extreme sex segregation point out the high vulnerability of N. aenigmaticus to extinction in southern Appalachia under major alteration of the habitats.

“Even though there are still unanswered questions, with the use of DNA technology, this publication has greatly expanded our understanding of the complex nature of N. aenigmaticus,” McFarland said.

Read the full article online here.

Filed Under: Emeritus, MAIN, publication

Ecology and Evolutionary Biology Announces 2020 Award Winners

May 8, 2020 by artsciweb

Filed Under: award, MAIN

Supporting Ecology & Evolutionary Biology

May 5, 2020 by artsciweb

We are grateful for our donors whose gifts help us provide support for undergraduate and graduate students in the department.

Beagle Memorial Fund for Research

Supports undergraduate, graduate or faculty research in ecology and evolutionary biology; generously given by former Associate Dean for Research in the College of Arts and Sciences and Head of EEB, Professor Christine R. B. Boake.

Daniel J. and Donna K. Popek Ecology Scholarship Endowment

Supports undergraduate research and scholarship for EEB majors at UT; generously given by Mr. and Ms. Popek. Mr. Popek graduated from the UT Department of Zoology in 1967.

William Byrne Hartz Biodiversity Endowment

Support for graduate students pursuing studies in environmental biology, biodiversity, sustainability, ecology, and conservation. Created in memory of William Byrne Hartz through a generous gift by Florence Hartz Jones. Awardees will be named Tennessee Conservation and Biodiversity Center scholars

Dr. Clifford Amundsen Ecology Scholarship Endowment

Support for undergraduate research and scholarship through the generosity of Ginny Dant and Kari Admunsen Apter. Amundsen was a faculty member in the Department of Botany at UT for 37 years. His research specialty was plant physiological ecology, working primarily in forests of TN, VA, KY, NC and the West. 

Lynne and Bob Davis Herbarium Awards 

For undergraduate student research focusing on plant natural history, taxonomy, and/or floristics. Lynne and Bob are passionate naturalists and have been volunteers at the UT herbarium for the past three years. They barcoded/imaged over 16,000 liverwort specimens and have databased/georeferenced thousands of UT specimens collected from around the world. 

Ben Hochman Memorial Awards 

For Student Research in organismal biology using primarily genetic data. Ben Hochman was a Geneticist in the Department of Zoology at UT from 1964 to 1988.  His research focused on genes of the fourth chromosome of Drosophila. By this endowment, his friends remember him and acknowledge his contributions.

Interested supporting student success? Donate online today.

Filed Under: newsletter

Department News and Updates

May 5, 2020 by artsciweb

Jessica Budke, an assistant professor of ecology and evolutionary biology and director of UT’s Herbarium, published a paper titled “Evolution of Perine Morphology in the Thelypteridaceae” in the International Journal of Plant Sciences, that looks at the dispersal of fern spores. Read More

Elizabeth Derryberry, a professor of ecology and evolutionary biology, received recognition in a timeline of important female ornithologists in a Cornell Lab of Ornithology article, focusing on the achievements of female ornithologists and their role in determining the causes of evolutionary advancements in birds. Read More

Ourou Gaoue, an assistant professor of ecology and evolutionary biology, coauthored a paper titled “Non-random medicinal plants selection in the Kichwa community of the Ecuadorian Amazon,” published in the Journal of Ethnopharmacology. Read More

Sergey Gavrilets, a distinguished professor in the Department of Ecology and Evolutionary Biology, has received more than $1.1 million in grants from the Army Research Office for study into societal resilience using evolutionary models and theories of revolution. Read More

Mike Harvey, a postdoctoral fellow in the UT Department of Ecology and Evolutionary Biology, published an article titled “Beyond Reproductive Isolation: Demographic Controls on the Speciation Process” in the Annual Review of Ecology, Evolution, and Systematics. Read More

Susan Kalisz, the College of Arts and Sciences Excellence Professor and head of the Department of Ecology and Evolutionary Biology, is a newly elected member of the American Academy of Arts and Sciences class of 2020. Read More

Stephanie Kivlin, an assistant professor of ecology and evolutionary biology, coauthored a paper titled “Fungal aerobiota are not affected by time nor environment over a 13-y time series at the Mauna Loa Observatory,” published in the journal Proceedings of the National Academy of Sciences. Read More. Kivlin also co-authored a paper in the Proceedings of the National Academy of Sciences showing that arbuscular mycorrhizal fungi are especially helpful to the plants they colonize. Read More

Elizabeth Derryberry, Charlie Kwit, and Beth Schussler received awards for their work in the Department of Ecology and Evolutionary Biology during the 2019 College of Arts and Sciences Faculty Awards banquet December 5, 2019. Read More

Filed Under: newsletter

Supporting Undergraduate Student Success

May 5, 2020 by artsciweb

What kind of careers am I qualified for with a concentration in EEB? Do I need to go to graduate school? What should I include on my CV? How can I get research experiences?

These are some of the questions undergraduates ask, or should ask themselves, while working on their undergraduate degrees. For many, however, those questions are not asked until the day after graduation, which makes it harder to reach their career goals. To ensure that students get assistance in how to answer these questions, faculty in EEB have started offering a series of opportunities to help students find answers.

Since 2017, undergraduates in the department have had a range of professional development opportunities to enrich their experiences and preparation. We offer four workshops each year on professional development topics to assist in skill development. Topics include graduate school de-mystified, how to write a CV, careers in EEB, how to work in a lab, and medical careers – conversations with interns. These hands-on workshops give students knowledge, background, and support as they navigate these topics. Students can also attend graduate student panels, resource discussions, and Q&A sessions with EEB faculty. To date, more than 150 students have attended the lunchtime workshops.

We also developed a comprehensive professional development course (EEB 311) that is taught every spring to make sure our graduates are prepared for their futures. By the end of this semester-long course, students know what career paths and options are available to them in ecology and evolutionary biology and how to prepare themselves for the future. Guest speakers with different careers, discussion panels, resource guides, practice and critiques of CVs and cover letters, as well as readings, give students the opportunity to learn about and practice hands-on skills to assist them in realizing their goals.

Lastly, a graduate student-undergraduate mentoring program, created and led by graduate students, pairs undergraduates with a graduate student with similar interests to provide advice and support from a near-peer as undergraduates navigate decisions about graduate school, careers, and how to find opportunities. To date, more than 100 undergraduates have been paired with approximately 20 graduate students in a successful collaboration that helps graduate students learn the skills of a mentor and undergraduate students gain critical information and guidance from a student who is a few years ahead of them.

Each of these opportunities help our undergraduates learn the skills they need to make a plan of where they want to go after graduation. Instead of asking “What do I do now?” our graduates are making decisions about which graduate school they will attend or which job offer they want to accept.

Filed Under: newsletter

Enhancing the Graduate Student Experience

May 5, 2020 by artsciweb

All smiles on a morning hike in the Smokies, during the graduate student retreat in August 2019.

All smiles on a morning hike in the Smokies, during the graduate student retreat in August 2019.

Graduate Researchers in Ecology, Behavior, and Evolution (GREBE) is the graduate student association in the Department of Ecology and Evolutionary Biology and plays several roles in enhancing the graduate student experience in the department.

“GREBE strives to foster an inclusive, dynamic, and enthusiastic atmosphere where graduate students feel supported, able to pursue their passions, and have access to the resources, training, and tools they need,” said Amanda Benoit, GREBE president.

Members of GREBE advocate for graduate students and organize elections for students to serve on departmental and university committees, contributing graduate student perspectives to decision-making at various levels. Members also organize professional development and science-based outreach opportunities, provide funding to support student travel to conferences, and link students to internal and external resources such as grants and fellowships. 

Through GREBE, graduate students have been working with faculty in EEB to streamline the process of adding experts from outside UT to doctoral committees, to serve members better as they pursue diverse lines of inquiry. GREBE created a new teaching and learning committee, which focuses on working with the department to create opportunities for graduate students to improve their teaching and to serve as instructor of record. 

In fall 2019, GREBE welcomed a new cohort of passionate and talented graduate researchers from around the US and the world (including students from South Korea, South Africa, and Cameroon). To help them settle in, get to know one another, and learn about East Tennessee, GREBE organized a welcome picnic and retreat at the EEB field station in the Great Smoky Mountains National Park.

“One of our main goals this year was to provide a space for graduate students to connect with their peers academically and socially,” said Krista DeCooke, GREBE vice president. “These connections lead to mentorships, collaborations, and friendships that last.”

EEB graduate students organized sessions on mental health resources and drafting a personal mission statement. They hosted an ice cream social, trivia night, and more events and sessions. They are also working to help keep students connected virtually while they are dispersed physically. 

In addition to a website, graduate students can learn more about GREBE and connect via social media. Follow @GREBE_UTK on Twitter or join the GREBE UTK Facebook Group.

Have a topic of interest to share with GREBE? Email them at grebeemail@gmail.com. Members of the group welcome ideas and input from fellow EEB graduate students.

Filed Under: newsletter

A Necessary Evolution

May 5, 2020 by artsciweb

Kalisz in the fieldHow did they do it?! Many people are asking how we managed the changes in teaching, research, and administration required to keep everyone as safe as possible while doing our jobs and serving our students. Instead of a quiet time of catching up on research and writing, members of our department used “spring break 2020” to become a hive of activity. Faculty and graduate students sprang into action and emerged at the end of the week with online versions of all of EEB’s spring term courses.

Faculty created lectures using voice-over techniques of the PowerPoint images usually presented in class. They posted the presentations, along with readings and videos, to Canvas course websites and made them accessible for viewing at any time. We facilitated interactive class discussions via Zoom and smaller breakout discussions in Zoom chat rooms. Faculty even gave quizzes and exams simultaneously online. Finally, we created a buddy system for each class so that students could finish their courses even if an instructor fell ill.

The EEB front office staff moved fully to telecommuting while handling purchase orders, hiring, payroll, generating budget spreadsheets, and much more all from home. To maintain social distancing and the safety of all, new research efforts are on hold and most labs are dark. Instead, faculty and students are analyzing data, writing papers and grant proposals, while creating new course material for their online offerings.

Essential personnel in the greenhouse and live animal facilities continue their on-campus efforts to ensure that plants and animals used in teaching and research remain healthy. We have all become more adept at Zoom—lab meetings, faculty meetings, student-advisor meetings, graduate student committee meetings, and more are all virtual. 

With school and daycare closings, work hours have flexed and the pace of work has changed as people take on the important 24/7 roles of caring for children and other family members. The EEB buildings may appear quiet, but our community is alive and well, caring not only for the education and research, but also for the non-work needs of everyone in the department. The speed, quality, and thoughtfulness of EEB’s response to the coronavirus-induced shutdown of our lives speaks to the dedication and humanity of all the people who work in this amazing department. I am grateful and proud of Team EEB!

Wishing you and your family health,

Susan Kalisz
Professor and Head
Department of Ecology & Evolutionary Biology

Filed Under: newsletter

Studying Salamanders in Southern Appalachia

May 5, 2020 by artsciweb

salamander

Students in the Ben Fitzpatrick Lab are encouraged to pose big questions about the origin and maintenance of biodiversity. Over the years, projects have included Matt Neimiller’s description of speciation in cave-fishes, Zach Marion’s proposal of new methods to measure and analyze diversity, and Cassie Dresser’s evaluation of genetic diversity in endangered bog turtles.

Fitzpatrick students, however, tend to be enthusiastic about a particular group of organisms: salamanders.

Salamanders symbolize biodiversity in the Southern Appalachians. They also represent all of the major questions in biodiversity science: What determines how many species can coexist in an ecosystem? How do new species arise? What explains individual variation within species? What is a species, anyways?

Ben Fitzpatrick received a faculty development leave for the fall semester so that he could spend long days sampling salamanders in the Great Smoky Mountains National Park. His goal is to re-evaluate patterns of diversity in large woodland salamanders and test hypotheses about the effects of competition, hybridization, and climate on species boundaries and coexistence.

Ben Holt, a second-year PhD student, has questions about diversity on a finer scale. He is investigating the microbes that inhabit the slimy skin of salamanders: the cutaneous microbiome. The diversity and composition of this microbiome might be modified as brook salamanders switch between aquatic and terrestrial life stages. Salamanders might also directly manipulate the cutaneous microbiome via various skin secretions. Holt is using microbial and biochemical techniques (in addition to long nights catching salamanders in the Smoky Mountain streams) to evaluate the importance of these factors in shaping the cutaneous microbiome.

Undergraduate students in the lab are pursuing other threads. Brianna Drake is using population genetics to study hybridization between stream-dwelling salamanders in the genus Desmognathus. Alex Funk is using DNA extracted from salamander feces to study their diets. Bryce Wade is studying small salamander occupancy of forest fragments within the city of Knoxville.

The UT Department of Ecology and Evolutionary Biology is the perfect place for students to study salamanders. After all, the Great Smoky Mountains National Park is known as the salamander capital of the world.

Filed Under: newsletter

Working at the Boundary of Science and Land Management

May 5, 2020 by artsciweb

Alix assists on a prescribed burn in Cades Cove. Photo credit: Matt Jernigan

Alix assists on a prescribed burn in Cades Cove. Photo credit: Matt Jernigan

Alix Pfennigwerth, a vegetation ecologist and UT EEB alumna (’11, ’17), has spent the past several years working in land management and science with the US Geological Survey (USGS) and National Park Service (NPS). Now, she works as a biologist with the Inventory & Monitoring Program at Great Smoky Mountains National Park (GSMNP). She credits a lot of her success today to her time spent in EEB.

“I often tell people that earning my master’s degree in ecology and evolutionary biology at UT was one of the hardest but most rewarding things I’ve done in my life,” Alix said.

Working at the boundary of science and land management, Alix wears many hats. Her primary responsibility at GSMNP is to design, implement, and manage a variety of long-term vegetation monitoring projects, but she also has many collateral duties. Alix collects ecological data from one of the park’s 160 long-term forest monitoring plots, teaches visitors and students about wetland ecology, and consults with park managers to help them carry out park activities in an ecologically sound manner. Sometimes, she also swings a Pulaksi on a prescribed burn fire line on trails with the park’s Search and Rescue team.

“The diversity of my work as a federal scientist is part of what I find so rewarding,” Alix said. “Due to my scientific training, I can be confident that I’m conducting the highest-caliber, most meaningful research and monitoring possible. I also find it incredibly satisfying to be able to apply that science to help answer the many questions and decisions that park managers are faced with every day.”

Alix credits EEB for preparing her for her career path. Some she realized at the time, but other things took a bit longer for her to appreciate fully. One easy connection is the successful grant proposals and papers Alix authored in graduate school and her continued success in writing grant proposals, scientific papers and agency reports. Alix also served as the undergraduate lab coordinator throughout graduate school in Jen Schweitzer’s lab. She credits this experience as well.

“I’ve continued to hire, manage and mentor interns and technicians with the USGS and NPS, and I’m comfortable doing this because I learned how to in Jen’s lab.”

During graduate school, Alix sought out roles and experiences that felt meaningful and relevant to her interests and career, such as serving on the board of the nonprofit Tennessee Invasive Plant Council, volunteering weekly with the GSMNP vegetation monitoring program, and presenting at the Natural Areas conference. This may have made an already busy graduate student busier, but Alix feels strongly that taking on these roles set her up for success.

“Success is accomplishing the many essential duties of a federal scientist, such as effectively managing interns and staff, communicating and collaborating productively with scientists and non-scientists, managing time and resources,” Alix said. “It is also being passionate, but level-headed about your work.”

Filed Under: newsletter

Mechanisms Limiting Species Ranges

May 5, 2020 by artsciweb

jacob moutouama

Jacob Moutouama was born and raised in the Atacora Mountain chain, a biodiversity hotspot of Benin in West Africa. Several important species live in the area, but they are biologically endangered, as Benin is also a threatened ecosystem.

Jacob first became sensitive to conservation issues in his community after an internship with the Benin National Forest Office and his participation in Tropical Biology Association Courses. He developed a particular interest in the impact of human disturbance on rare species. Jacob’s experiences inspired him to pursue further training and to perform research that can positively impact conservation in the tropics, so he applied to become a doctoral student in the UT Department of Ecology and Evolutionary Biology.

In fall 2018, he joined the department as a PhD student and member of the Gaoue Lab. Through his research, Jacob seeks to understand the evolutionary and ecological mechanisms that limit species ranges. To do so, he studies Thunbergia atacorensis, an endemic plant of West Africa in a research system that aims to understand how biotic and abiotic factors can explain weak population dynamics at the edge of species ranges. His research approach includes manipulative and common garden experiments, field demographic data, structural equation models, and developing integral projection models.

“Even though I have only been here a year, I have been accepted warmly into the department and Professor Gaoue’s lab,” Jacob said. “I’ve made lifelong friends and mentors and the support I have at UT has helped me to be very productive.”

In his first year of the PhD program, Jacob has already received seven grants and the Best Progress Toward a Dissertation award from the EEB department.

Filed Under: newsletter

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Ecology & Evolutionary Biology

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Email: eeb@utk.edu

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