Missed the Grad School Worshop? Catch it Here.
Undergrads, if you missed the Grad School workshop earlier in the fall, you can catch it here and hear great advice from current EEB grad students.
Singing in a Silent Spring
Birds respond to a half-century soundscape reversion during the COVID-19 shutdown
When the novel coronavirus swept across the country, forcing most businesses to close their doors and people to stay home as a measure to stop the spread, people looked to the little things for signs of hope. For Elizabeth Derryberry, hope came in the form of songbirds.
Like most people during spring 2020, Derryberry focused on keeping her family safe and healthy and balancing work and homeschooling. When she saw photos of an empty Golden Gate Bridge in San Francisco, however, her scientific curiosity kicked in.
“When I saw those photos, it struck me just how little traffic there was in the city,” said Derryberry, an associate professor in the Department of Ecology and Evolutionary Biology (EEB). “I was curious to find out if this meant it was much quieter and what that might mean for the songbird I study.”
Actions taken to control the COVID-19 pandemic reduced motor vehicle traffic, potentially alleviating auditory pressures on animals that rely on sound for survival and reproduction. Derryberry, working with fellow EEB professor Michael Blum, collaborated with a team from California Polytechnic State University, George Mason University, and UT to evaluate if and how songbirds might respond to the newly emptied acoustic space that resulted from fewer people on the road.
Their findings, recently published in Science, were based on a comparison of soundscapes and songs of the white-crowned sparrow across the San Francisco Bay Area prior to and during the recent statewide shutdown. The researchers also looked at singing performance, evaluating how acoustic qualities important for mate attraction and territorial defense shifted to accommodate background noise conditions.
For more than a decade, Derryberry has recorded birds in San Francisco to study how noise affects bird song. In 2012, she began working with David Luther, an ecologist and assistant professor of biology at George Mason University, to study the effects of noise pollution on the sparrows. This involved recording noise and bird song from both urban and rural sites across the San Francisco Bay Area from April through June of 2016.
Jennifer Phillips, who completed her doctorate with Derryberry, captured noise and song recordings from the same areas in April and May of 2020 while working as a postdoc at California Polytechnic State University, San Luis Obispo. This allowed Derryberry and her collaborators, including UT research scientist and data analyst Graham Derryberry, to draw comparisons to pre-pandemic conditions.
The team found that the dramatic reduction of human movement during the shutdown had effectively erased a half-century of urban noise pollution. Not only had traffic, as evidenced from Golden Gate Bridge records, returned to levels not seen since 1954, but also there were no longer differences in noise levels between densely urban areas of San Francisco and rural Marin County.
The researchers also found that white-crowned sparrows responded by producing songs at lower amplitudes, but because it was so quiet, they were able to maximize communication distance.
“When the noise levels dropped, birds sang more softly,” Luther said. “Even though they sang more softly, their songs travelled twice the distance because it was so much quieter.”
This also meant that people could hear effectively four times more birds than usual and helps explain media reports suggesting that bird songs sounded louder during the shutdown. Birds sounded louder because people could hear more of them.
This study illustrates how noise pollution impacts communication during normal conditions.
“Our study substantively advances fundamental understanding of animal behavior,” Derryberry said. “We observed changes in behavior during the COVID-19 shutdown that went far beyond those that have been documented in small scale, short term manipulations of the noise environment – both in captivity and in the wild. In fact, we demonstrated for the first time that prior work does not accurately predict wildlife responses to landscape-scale remediation of noise pollution. Our research provides a more accurate description of this relationship.”
Derryberry will continue navigating the uncertainties the novel coronavirus brings with it, but appreciates the silver lining of this study and the hope that it brings.
“COVID-19 has been devastating in many ways for our society,” Derryberry said. “The loss of human life alone is overwhelming. It’s a testament to people though that there are still bright spots amid such loss. One of those bright spots has been how much more people are noticing birds, particularly in cities, around the world. I hope this study seizes this moment to highlight how much noise affects wildlife and how noise is one form of pollution that people can directly address in ways that can rapidly and dramatically change the quality of life for wildlife.”
Budke Receives NSF Collaboration Grant to Digitize Lichens and Bryophytes
Across the planet’s terrestrial surface lives a layer of organisms that cannot be seen with the naked eye. Lichens and bryophytes are hosts to these cryptobiotic communities that play a critical role in stabilizing soil, preventing erosion, absorbing rainfall, and providing nutrients for the growing plants around them. This hidden life creates a critical miniature forest that serves as an important habitat for tiny animals and forms a “living skin” found throughout the world, from canyon deserts to polar icecaps.
Jessica Budke, director of the UT Herbarium (TENN) and her colleagues from 25 institutions across the United States received a grant from the National Science Foundation to image and digitize associated metadata for close to 1.2 million lichen and bryophyte specimens housed in their collections.
“Natural history collections are a physical record of our planet’s biodiversity across space and time,” said Budke, who is also an assistant professor in the UT Department of Ecology and Evolutionary Biology. “These specimens not only serve as records of the past, but they are a critical resource for our future. They help us to answer important questions surrounding invasive species, conservation biology, and help us to describe species that are new to science.”
The project, Building a Global Consortium of Bryophytes and Lichens: Keystones of Cryptobiotic Communities (GLOBAL), will enable researchers from around the world to access specimen metadata and photos of the plants. Budke is the lead principal investigator for the project.
“For the first time we will be taking photos not just of the label information, but also the physical organisms, which will enable researchers to digitally peek inside the packet to collect data from these specimens remotely,” Budke said. “The more data about these specimens that is available online enables researchers to expand the scope and impact of their research questions.”
The UT Herbarium is one of the largest plant natural history collections in the southeast with more than 640,000 specimens, including more than 180,000 mosses and lichens.
“Digitization is a game changer,” said Eric Tepe, curator of the Margaret H. Fulford Herbarium at the University of Cincinnati, one of the institutions involved in the project. “For centuries, natural history collections have been locked up in museums, available only to a handful of visitors. Large-scale digitization efforts, like this project, open the museum doors to the world, making specimen data and, in many cases, images freely available to everyone.”
Researchers with the project will partner with Zooniverse, a citizen science web portal, to develop an online platform for citizen scientists to make observations on character traits that can improve the information and fill in some of the gaps not covered by the scientific labeling process.
These integrated data will form a critical resource for evolutionary and ecological studies that researchers hope will lead to a deeper understanding of the role bryophytes and lichens play in carbon and nitrogen cycling, the evolution of biodiversity, and more.
In addition to collecting information about the specimens, undergraduate students at the partner institutions will have an opportunity to receive funding for professional training in image capture and processing, digitization, and collections management. Researchers will leverage local resources to promote underrepresented students in STEM fields and integrate a public outreach component to K-12 science classes and other science youth groups.
“This project represents a collaborative effort of 25 major research institutions,” Budke said. “It will push the field of organismal biology forward by leaps and bounds, enabling us to tackle large-scale biology questions that none of us could answer alone.”
Partner Institutions
- Academy of Natural Sciences
- Arizona State University
- Brigham Young University
- Duke University
- Louisiana State University
- Miami University
- Michigan State University
- Missouri Botanical Garden
- New York Botanical Garden
- Ohio State University
- Oregon State University
- The Field Museum
- University of Alaska
- University of California, Berkeley
- University of Cincinnati
- University of Colorado
- University of Florida
- University of Illinois at Urbana Champaign/Illinois Natural History Survey
- University of Michigan
- University of Minnesota
- University of Nebraska State Museum
- University of Tennessee, Knoxville
- University of Washington
- University of Wisconsin
- Yale University
Kwit, Graduate Students’ Research Featured in Science
Charles Kwit, assistant professor of ecology, and his graduate students Chloe Lash and Chelsea Miller studied the microbial communities of seeds to discover what role ants play in seed dispersion. They looked at wild ginger, bloodroot, and twinleaf.
Read more about their research and the role ants play in forest ecology in a recent Science article, Don’t crust that ant – it could plant a wildflower.
EEB Head’s statement on racism and police misconduct
Dear EEB community,
The horrific issues of racism and police misconduct grabbing our attention lately are not news to the black members of our department, who experience it their entire lives. This racism, whether overt or unconscious, is present in our department, our field, and in our community.
As Dean Lee stated in her message to the college, systemic changes to fight racism must also happen at levels outside our college. But change must happen here in EEB, as well. This motivates me to ask what we can change to increase the safety and security of African-Americans in EEB and beyond. To make changes and move in the right direction, the department needs everyone’s blunt and honest input.
We are a department motivated by science and facts – we seek to learn. Many in our department, including me, experience undue privilege and security relative to our African-American friends, neighbors, and co-workers, merely because we are white. We need each other to identify and change the racism in our society.
Please give us your ideas and feedback. You should have received this message, with a link to a survey, in your UT email. You can also contact me directly.
I also encourage you to investigate formal reporting for incidents occurring at UT:
Finally, we can all make strides and become effective allies. I encourage you to read the following article: A guide to how you can support marginalized communities.
We are one community and need to support each another.
Sincerely,
Susan Kalisz
Professor and Head
Department of Ecology & Evolutionary Biology
Kalisz, Heberling, and Collaborators Receive ESA’s Mercer Award
Susan Kalisz, professor and head of the Department of Ecology and Evolutionary Biology, and former post-doctoral fellow Mason Heberling, now assistant curator of botany at the Carnegie Museum of Natural History, received the Ecological Society of America’s (ESA) George Mercer Award for their paper, “Phenological mismatch with trees reduces wildflower carbon budgets,” published in Ecology Letters in February 2019.
“The Mercer Award is one of ESA’s most prestigious awards,” Kalisz said. “We were all thrilled that our paper was chosen.”
Co-authors and co-awardees include Caitlyn MacKenzie from the University of Maine, Jason Fridley from Syracuse University, and Richard Primack from Boston University.
Researchers leveraged the integration of historical records and contemporary experiments on many wildflower species to see how the overstory and understory responded differently to climate change and the unexpected consequences that followed. They used historical phenological observations, the oldest of which were made by Henry David Thoreau in the 1850s, alongside long-term temperature records, contemporary garden experiments from Kalisz’s NSF LTREB funding, and a simulation model.
“Our model projects a 10-48 percent reduction carbon gain and lower fitness for forest wildflowers in the coming century,” Kalisz said. “This happens because the overstory leaves emerge in response to warming spring temperatures, which limits the later emerging understory wildflowers’ photosynthesis, creating a phenological mismatch.”
The George Mercer Award is given for an outstanding ecological research paper published by a younger researcher, with the lead author 40 years of age or younger at the time of publication. The paper must have been published in 2018 or 2019 to be eligible for this year’s award, which will be presented in August 2020 at ESA’s (virtual) annual meeting along with a video depicting the work. Heberling and Mackenzie, both younger researchers, will share the monetary prize.
Read the paper online here.
–By Kelly Alley
McFarland Coauthors Paper on Spatially Separated Sexes and Extreme Sex Ratios in Hornwort
Kenneth McFarland, emeritus greenhouse manager and lecturer in the UT Department of Ecology and Evolutionary Biology, recently co-authored a paper in Frontiers in Plant Science titled “Population Genomics and Phylogeography of a Clonal Bryophyte With Spatially Separated Sexes and Extreme Sex Ratios.”
Sexual reproduction plays an essential role in species’ survival and maintenance. Clonality and other forms of asexual reproduction, however, also exist, especially in plants.
In their study, researchers focused on the southern Appalachian clonal hornwort, Nothoceros aenigmaticus, which grows on rocks near or submerged in streams in watersheds of the Tennessee and Alabama Rivers. This hornwort is a good example of a plant that reproduces asexually and clonally as its male plants seem to produce non-functional sperm cells. It is distributed in southern Appalachia, Mexico, and in “alpine” regions of tropical South America.
“Early bryophyte taxonomists noted the existence of this plant in the Southern Appalachian Mountains, but hesitated naming it for lack of any sexual reproductive structures that would define it as a liverwort or hornwort,” McFarland said. “After these sexual reproduction structures were discovered, it was finally named and classified as a hornwort. This was not the end of the story. The next surprising discovery was that the species had a limited distribution and the two sexes were isolated from each other. “
Unlike elsewhere in its range, male and female plants in the US are geographically separated by ca. 30 km across rivers and mountains, as they grow on rocks in different watersheds of the Tennessee and Alabama Rivers.
“Whether male and female populations were geographically isolated to the extent that migration, and sporadic sexual reproduction was completely absent, and hence whether these populations relied always exclusively on asexual propagation was unknown,” McFarland said. “Resolving this uncertainty is critical to assess the vulnerability of these populations to environmental change.”
To confirm the total reproductive isolation, reconstruct its origin, and assess the mode of reproduction of N. aenigmaticus in southern Appalachia, researchers analyzed genetic data of more than 250 individuals of the species. Nothoceros aenigmaticus likely immigrated to the US from sexual Mexican ancestors about 600–800,000 years ago. The genomic data confirmed the absolute reproductive isolation between sexes and the absolute genetic isolation among southern Appalachian populations.
“The southern Appalachian drainage system is thought to have been remodeled by geological processes during the Pleistocene glaciations, which could have mixed genotypes from contiguous watersheds,” McFarland said.
Populations from contiguous watersheds share clones, but individuals lack mixed genetic traits, consistent with the lack of sexual reproduction, as is their overall reduced genetic diversity. This low extant genetic diversity and the extreme sex segregation point out the high vulnerability of N. aenigmaticus to extinction in southern Appalachia under major alteration of the habitats.
“Even though there are still unanswered questions, with the use of DNA technology, this publication has greatly expanded our understanding of the complex nature of N. aenigmaticus,” McFarland said.
Read the full article online here.
Supporting Ecology & Evolutionary Biology
We are grateful for our donors whose gifts help us provide support for undergraduate and graduate students in the department.
Beagle Memorial Fund for Research
Supports undergraduate, graduate or faculty research in ecology and evolutionary biology; generously given by former Associate Dean for Research in the College of Arts and Sciences and Head of EEB, Professor Christine R. B. Boake.
Daniel J. and Donna K. Popek Ecology Scholarship Endowment
Supports undergraduate research and scholarship for EEB majors at UT; generously given by Mr. and Ms. Popek. Mr. Popek graduated from the UT Department of Zoology in 1967.
William Byrne Hartz Biodiversity Endowment
Support for graduate students pursuing studies in environmental biology, biodiversity, sustainability, ecology, and conservation. Created in memory of William Byrne Hartz through a generous gift by Florence Hartz Jones. Awardees will be named Tennessee Conservation and Biodiversity Center scholars
Dr. Clifford Amundsen Ecology Scholarship Endowment
Support for undergraduate research and scholarship through the generosity of Ginny Dant and Kari Admunsen Apter. Amundsen was a faculty member in the Department of Botany at UT for 37 years. His research specialty was plant physiological ecology, working primarily in forests of TN, VA, KY, NC and the West.
Lynne and Bob Davis Herbarium Awards
For undergraduate student research focusing on plant natural history, taxonomy, and/or floristics. Lynne and Bob are passionate naturalists and have been volunteers at the UT herbarium for the past three years. They barcoded/imaged over 16,000 liverwort specimens and have databased/georeferenced thousands of UT specimens collected from around the world.
Ben Hochman Memorial Awards
For Student Research in organismal biology using primarily genetic data. Ben Hochman was a Geneticist in the Department of Zoology at UT from 1964 to 1988. His research focused on genes of the fourth chromosome of Drosophila. By this endowment, his friends remember him and acknowledge his contributions.
Interested supporting student success? Donate online today.
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