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Home » newsletter » Page 3

newsletter

Working at the Boundary of Science and Land Management

May 5, 2020 by artsciweb

Alix assists on a prescribed burn in Cades Cove. Photo credit: Matt Jernigan

Alix assists on a prescribed burn in Cades Cove. Photo credit: Matt Jernigan

Alix Pfennigwerth, a vegetation ecologist and UT EEB alumna (’11, ’17), has spent the past several years working in land management and science with the US Geological Survey (USGS) and National Park Service (NPS). Now, she works as a biologist with the Inventory & Monitoring Program at Great Smoky Mountains National Park (GSMNP). She credits a lot of her success today to her time spent in EEB.

“I often tell people that earning my master’s degree in ecology and evolutionary biology at UT was one of the hardest but most rewarding things I’ve done in my life,” Alix said.

Working at the boundary of science and land management, Alix wears many hats. Her primary responsibility at GSMNP is to design, implement, and manage a variety of long-term vegetation monitoring projects, but she also has many collateral duties. Alix collects ecological data from one of the park’s 160 long-term forest monitoring plots, teaches visitors and students about wetland ecology, and consults with park managers to help them carry out park activities in an ecologically sound manner. Sometimes, she also swings a Pulaksi on a prescribed burn fire line on trails with the park’s Search and Rescue team.

“The diversity of my work as a federal scientist is part of what I find so rewarding,” Alix said. “Due to my scientific training, I can be confident that I’m conducting the highest-caliber, most meaningful research and monitoring possible. I also find it incredibly satisfying to be able to apply that science to help answer the many questions and decisions that park managers are faced with every day.”

Alix credits EEB for preparing her for her career path. Some she realized at the time, but other things took a bit longer for her to appreciate fully. One easy connection is the successful grant proposals and papers Alix authored in graduate school and her continued success in writing grant proposals, scientific papers and agency reports. Alix also served as the undergraduate lab coordinator throughout graduate school in Jen Schweitzer’s lab. She credits this experience as well.

“I’ve continued to hire, manage and mentor interns and technicians with the USGS and NPS, and I’m comfortable doing this because I learned how to in Jen’s lab.”

During graduate school, Alix sought out roles and experiences that felt meaningful and relevant to her interests and career, such as serving on the board of the nonprofit Tennessee Invasive Plant Council, volunteering weekly with the GSMNP vegetation monitoring program, and presenting at the Natural Areas conference. This may have made an already busy graduate student busier, but Alix feels strongly that taking on these roles set her up for success.

“Success is accomplishing the many essential duties of a federal scientist, such as effectively managing interns and staff, communicating and collaborating productively with scientists and non-scientists, managing time and resources,” Alix said. “It is also being passionate, but level-headed about your work.”

Filed Under: newsletter

Mechanisms Limiting Species Ranges

May 5, 2020 by artsciweb

jacob moutouama

Jacob Moutouama was born and raised in the Atacora Mountain chain, a biodiversity hotspot of Benin in West Africa. Several important species live in the area, but they are biologically endangered, as Benin is also a threatened ecosystem.

Jacob first became sensitive to conservation issues in his community after an internship with the Benin National Forest Office and his participation in Tropical Biology Association Courses. He developed a particular interest in the impact of human disturbance on rare species. Jacob’s experiences inspired him to pursue further training and to perform research that can positively impact conservation in the tropics, so he applied to become a doctoral student in the UT Department of Ecology and Evolutionary Biology.

In fall 2018, he joined the department as a PhD student and member of the Gaoue Lab. Through his research, Jacob seeks to understand the evolutionary and ecological mechanisms that limit species ranges. To do so, he studies Thunbergia atacorensis, an endemic plant of West Africa in a research system that aims to understand how biotic and abiotic factors can explain weak population dynamics at the edge of species ranges. His research approach includes manipulative and common garden experiments, field demographic data, structural equation models, and developing integral projection models.

“Even though I have only been here a year, I have been accepted warmly into the department and Professor Gaoue’s lab,” Jacob said. “I’ve made lifelong friends and mentors and the support I have at UT has helped me to be very productive.”

In his first year of the PhD program, Jacob has already received seven grants and the Best Progress Toward a Dissertation award from the EEB department.

Filed Under: newsletter

The Dung Beetle & Climate Change

May 5, 2020 by artsciweb

morgan fleming

Morgan Fleming is a senior working in the Sheldon Lab. She has always loved the sciences and the outdoors, and quickly found her home in the EEB department after arriving at UT. Recently, Morgan completed an independent project investigating how early life stages of the dung beetle, Onthophagus taurus, change their metabolism in response to temperature, a key question in response to climate change. Specifically, she examined metabolic plasticity in response to increasing temperature mean and variance and potential fitness tradeoffs.

Dung beetles provide a variety of ecosystem services by removing and processing dung, including nutrient cycling, reduction of parasites, and secondary seed dispersal, that may be altered in a warming world. Understanding how dung beetles respond to temperature changes can thus lead to better predictions of how climate change may affect key ecosystem services. While there is abundant research on thermal responses of adult insects, less is known about physiological responses in earlier life stages that could help mitigate the impacts of climate change. Morgan reared beetles in incubation treatments that varied in temperature mean and fluctuation. She completed metabolic trials on beetle pupae and then measured body size of the beetles when they emerged as adults. Morgan found that pupae in the warmest, most variable temperatures reduced their energetic demands but had much smaller adult body sizes compared to pupae reared in other temperature treatments. Results of this study suggest that plasticity in early life stages could mitigate impacts of climate change on dung beetles, but this may come at a cost to fitness later in life since small-bodied adults have reduced reproductive success.

Earlier this year, Morgan received the EEB Outstanding Undergraduate Research Poster Award, the Award of Excellence at the EURēCA conference, and a summer research grant from the UT Office of Undergraduate Research. In August 2019, she presented her work at a national conference. She also won a prestigious National Science Foundation Graduate Research Fellowship. Morgan plans to continue on to EEB’s PhD program.

Filed Under: newsletter

Leaders in Biodiversity and Conservation Science

May 5, 2020 by artsciweb

The University of Tennessee is nestled in an important global biodiversity hotspot. The Great Smoky Mountains National Park (GSMNP) is the most biodiverse park in the National Park system, named a UNESCO World Heritage Site, and an International Biosphere Reserve. Scientists in the UT Department of Ecology and Evolutionary Biology (EEB) and others have helped document more than 19,000 species in the park and think there could be an additional 80,000 to 100,000 species within the GSMNP. Many consider this region a naturalist’s paradise. Those of us in the EEB community agree and feel fortunate to be able to conduct research in the park.

endangered painted trilliumThis regional biodiversity also faces local challenges such as increased urbanization and population density, fires, and global challenges such as climate change. Understanding and conserving the ecosystems and their functions are critical to safeguarding the many life sustaining and enhancing benefits people in the region derive from nature. For example, GSMNP is the most visited national park in the US, bringing more than $950 million in visitor spending in 2019 that supported 13,737 jobs in the local area, but overuse is a park management concern. Likewise, the mighty Tennessee River provides water to five million people and is home to more than 250 species of native fishes. East Tennessee is becoming increasingly important as a significant carbon sink because of its intensively managed, highly productive forests.

The rich local biodiversity and the expertise at UT and UT Institute of Agriculture puts our university at the forefront of the both studying biodiversity and helping address the biodiversity crisis. With the Smokies at our own backdoor, UT is uniquely positioned to be the leader on the science of biodiversity and conservation in the Eastern United States.

The emerging Tennessee Center for Biodiversity and Conservation (TCBC) is being spearheaded by a group of faculty in EEB, but includes more than 89 faculty and researchers across campus. TCBC will serve as a hub of expertise to train students and to generate, synthesize, organize, and analyze biodiversity data in ways that will not only conserve biodiversity, but also benefit our partner organizations and the people of East Tennessee.

“Our department at UT is already ranked among the top 10 percent of all ecology programs at public or private institutions in North America” said Susan Kalisz, professor and head of the Department of Ecology and Evolutionary Biology. “Recognizing this strength, we have partnered with other departments across UT/UTIA and made further investments into EEB faculty and infrastructure to position TCBC to achieve a leadership role in the nation.”

Federal and state government agencies, nongovernmental organizations, and other institutions such as museums, herbaria, and natural history collections maintain data that serve as the foundation of our biodiversity knowledge in Tennessee. One goal of the new TCBC will be to help unify existing strengths across campus with current efforts across the state through data analyses and modeling.

“The scope of biodiversity and conservation science questions means that an interdisciplinary approach is required to elevate UT as a national leader in biodiversity research,” Kalisz said. “Through our coalition of partnerships, we aim to advance community-engaged research centering on biodiversity data integration with field studies and remote sensing of environment to foster evidence-based biodiversity conservation.”

TCBC is still in its infancy, but when realized, it will act as the fulcrum for the rich expertise in biodiversity and conservation at the University of Tennessee and position our students and faculty at the forefront of conservation, exploring a variety of biodiversity topics from microbes and organisms to species and ecosystems.

Special thanks to Florence Hartz Jones for establishing the William Byrne Hartz Biodiversity Endowment, which supports graduate students pursuing studies in environmental biology, biodiversity, sustainability, ecology, and conservation. Awardees will be named Tennessee Conservation and Biodiversity Center scholars.

Filed Under: newsletter

Impacts of Microbiomes on Mutualisms

November 16, 2018 by artsciweb

Jonathan DickeyJonathan Dickey, a graduate student in the Fordyce lab, investigates the mediation of pollinator network assembly by rhizospheric soil microbiota through reproductive plant traits and aboveground fitness consequences in the genus Salvia. He demonstrates this by sampling soil microbiomes of Salvia lyrata at various phenological stages of development while measuring traits like photosynthetic biomass and floral abundance.

“We have seen before that the main driver of pollinator visitation and community composition relative to ecoregion and soil context is driven by plant composition, floral traits, and rewards, but how do belowground communities influence plant distribution and relative attractiveness towards insects?” Jonathan says.

Jonathan plans to quantify soil microbial communities based on 16S rRNA gene abundance using Illumina next-generation sequencing for each plant replicate per phenological stage. Jonathan’s exploration of community assembly with Salvia lyrata is multidisciplinary and connects community ecology with population level, evolutionary processes like the phenotypic selection. Furthermore, he has been optimizing a protocol for seed sterilization and germination for the genus Salvia by repeated processes that include seed coat surface sterilization and heat treatments to remove all potential endophytic microbiota. Upon successful germination, Jonathan plans to use soil microbial slurries associated with juveniles and flowering individuals to measure flowering time, abundance, corolla tube length, and ultimately pollinator visitation rates.

Additionally, he uses species distribution modeling (SDMs) to inspect how nutrient based mutualisms can breakdown in future climate scenarios. Through this exploration, he explicitly states the spatial extent at which potential niche divergence could occur in Eastern North America and the implications for conservation and effects on higher trophic levels. From yet another avenue, Jonathan is writing an R package employing MuSSE, a phylogenetic method, to analyze population size as a trait dependent on the presence of a stress-tolerant gene. The utility of this package is versatile and can provide a nuanced look at community disassembly in light of climate change or various disturbance events.

“We’re just now beginning to fully appreciate the vital role that microbial communities play across levels of ecological organization,” Fordyce says. “Jonathan’s project, entirely of his own design, is timely and novel. I’m looking forward to seeing what he discovers.”

Filed Under: graduate, newsletter

New Dimension of Plant Mating Systems

November 16, 2018 by artsciweb

Daniel MalagonIn spring 2018, Daniel Malagon won the EEB Undergraduate Research Poster Contest as a junior. He has been conducting out-of-class research over the course of his undergraduate career. He has devoted as much of his time as possible into two labs – one led by Professor Susan Kalisz (EEB) and one led by Professor Matt Gray (FWF).

Using the genus Collinsia as a model, the Kalisz lab investigates the ecological causes and genetic and genomic consequences of mating system divergence between closely related sister species pairs. Daniel added a new dimension to ongoing studies on the evolution of plant mating systems. His research asked if senescence differed between outcrossing and selfing mating species using pollen performance as the metric. An outcrossing mating system relies on a vector to move pollen among flowers, while selfers autonomously move pollen within the same flower.

“Daniel arrived in our lab the first day of his freshman year on fire,” Kalisz says. “He was eager to learn the research ropes and do his own project. His research produced novel, surprising, and soon-to-be-published results: selfers pollen does not show senescent decline, while outcrossers do!”

In the UT Center for Wildlife Health (CWH), Daniel studies amphibian disease epidemiology. Currently, he is helping determine the potential impact a recently discovered fungal pathogen (Batrachochytrium salamandrivorans) may have on endemic salamander species. Using disease epidemiology models, the Gray-Miller Lab hopes to thwart invasion of this pathogen should it ever reach North America. Daniel’s senior thesis project focuses on the probability of disease transmission via direct contact between salamanders as the disease progresses.

“It has been a privilege to co-mentor Daniel with Dr. Debra Miller,” says Gray, associate director of the UT CWH. “We look at all undergraduate researchers as significant and important components of the CWH, capable of advancing the frontier of science.”

“I strongly encourage any motivated student to look into participating in undergraduate research with a professor whose research they find interesting,” Daniel says. “My participation in these two research labs has been the highlight of my undergraduate experience. I feel very privileged to have had this opportunity to engage with such an incredible faculty and staff. I hope to take everything that I have learned with me to graduate school next fall.”

Malagon doing research

Filed Under: newsletter, undergraduate

What’s the Story?

November 16, 2018 by artsciweb

Anna Killeen Cameron is an undergraduate researcher who has worked in the Simberloff and Leppanen lab for the past year on a media analysis related to information about the management of the hemlock woolly adelgid.

Anna Killeen CameronThe hemlock woolly adelgid (Adelges tsugae) is an invasive insect that is devastating hemlock populations (Tsuga canadensis and T. caroliniana) in eastern North America. Anna and fellow students in the lab analyzed the type and frequency of information presented by the media, including newspaper, radio, and television. In April 2018, they presented posters about their research at UT’s Exhibition of Undergraduate Research and Creative Achievement (EURēCA).

“Anna took the initiative to dig into a substantial dataset and helped us identify possible trends in literature about invasive species management,” says EEB’s Research Assistant Professor Christy Leppanen.

Anna also spent the summer conducting research with EEB PhD candidate Angela Chuang, Professor Leppanen, and EEB undergraduate Casey Fellhoelter. They studied the behavior of a parasitoid wasp and its interaction with the orb weaver spider, Cyrtophora citricola, which is invasive in Florida. The wasp (Philolema sp.) is a newly identified species, so the information gathered about the wasp will contribute to its future species description. Her work to understand the interactions between the wasp and the orb weaver spider are also important in determining whether the wasp could be used as a potential biological control of invasive C. citricola populations.

“Undergraduate research has been one of the best parts of my undergraduate experience. I’ve built great relationships with fellow students and with professors who I now consider to be mentors. It has challenged my way of thinking and has provided me with skills I would not have developed otherwise,” says Anna, who looks forward to her senior year at UT and hopes to continue to gain more field and research experience.


Leppanen C, Frank DM, Lockyer JJ, Fellhoelter CJ, Cameron AK, Smith LJ, Hardy BA, Clevenger MR, Simberloff D (2018) Media representation of hemlock woolly adelgid management risks: A case study of science communication and invasive species control. Biological Invasions.

Filed Under: newsletter, undergraduate

Ants as Seed Dispersers

November 16, 2018 by artsciweb

Chloe LashAlthough it is likely most people have experienced ants at a picnic, they may not realize ants are important seed dispersers, a mutualism referred to by ecologists as myrmecochory. Seed dispersal by ants exists worldwide, but the eastern deciduous forests are a hotspot for this ant-plant interaction. Approximately 35 percent of the herbaceous plants in the understory of forests in eastern North America rely on ants for seed dispersal. Plant species that have coevolved myrmecochory have an oil-rich appendage, known as an elaiosome. The elaiosome attracts the ants with chemical cues. Ants pick up the seed by the elaiosome and return with it to their nest where they feed the elaiosome to their brood. The seed either remains in the nest or is taken outside of the nest. Thus, in myrmecochory, ants gain food, and seeds receive dispersal away from their parent plant, protection from seed predators, and a nutrient-rich germination site in or around ant nests.

Additional organisms likely play a role in this interaction. Microbes, such as bacteria and fungi, are abundant in soil and decaying wood environments where ants nest and seeds germinate. Some of these microbes are harmful to plants or ants, so ants and plants have defenses against these pathogens. Each partner in the ant seed dispersal mutualism has the potential to affect the other partner’s microbes. Chloe Lash, a graduate student in the Kwit Lab, is investigating the effects of chemicals and microbes in this mutualism for her dissertation.

Chloe uses advanced chemical identification techniques to investigate plant and ant chemicals and their potential antimicrobial properties. A combination of traditional and next generation sequencing techniques allows Chloe to understand the microbial loads that both ants and seeds encounter and how those microbial communities change when the partners interact with each other. This novel incorporation of chemical and microbial facets into myrmecochory will contribute to understanding the evolution and persistence of the myrmecochory mutualisms and can help scientists predict the consequences of global change-related disruptions.

ant larvae

Filed Under: graduate, newsletter

An Untraditional Concentration

November 16, 2018 by artsciweb

John Patrick (J.P.) CarneyPursuing his DDS at Meharry Medical College in Nashville, Tennessee, John Patrick (J.P.) Carney (’13) begins his fourth and final year of dental school this fall. He will graduate May 2019. A graduate from the University of Tennessee, Knoxville, Carney received his BS in biological sciences with a concentration in ecology and evolutionary biology. Before he began his first year at UT, Carney knew he wanted to become a dentist.

Although biochemistry and cellular and molecular biology and chemistry are two of the traditional pre-dental majors, Carney declared his major in biological sciences with a concentration in EEB. He decided on an untraditional concentration after becoming acquainted with other pre-health students in his prerequisite classes. With most of the requirements completed, Carney discovered his niche, electing to focus his studies in the area that would allow him to stand out during the intensely competitive environment of dental school admissions. The experience of EEB allowed Carney to master the art of communication, which contributes to his success in dental school. Likewise, the correlation of lecture topics with weekly field trips to places like Ijams Nature Center and the Knoxville Zoo allowed members of the EEB department to find balance in real world application of knowledge.

The study of ecology and evolutionary biology is a prime example of the way people can benefit from having diversity in the classroom and in life. Carney found an environment of great diversity waiting for him at Meharry Medical College, a school that welcomes all to its campus and exemplifies the concept of diversity. The diversity among dental students created an inclusive atmosphere that facilitated the treatment of patients from all around the world. This level of diversity taught Carney an important concept in healthcare: cultural competency, a factor that can impact overall patient satisfaction and quality of care. More diversity in the classroom or a healthcare setting can ultimately lead to substantially improved interprofessional collaboration, which can help reduce medical errors, improve the quality of care, and meet the needs of diverse populations. Taking in different perspectives on problems facing the healthcare industry is key to finding solutions and providing patients with optimal care and satisfaction.

Carney looks forward to utilizing the lessons he learned in EEB in his future practice. As a general dentist, he plans to further his knowledge in implant dentistry to provide patients the highest standard of dental care. Knoxville will always be home sweet home, and he knows that the future is bright on Rocky Top.

Filed Under: alumni, newsletter

Invisible Organisms with an Enormous Impact

November 16, 2018 by artsciweb

Understanding the distributions and functions of microscopic fungi and bacteria is what drives new Assistant Professor Stephanie Kivlin’s research.

Stephanie Kivlin“Microbes can sometimes get a bad reputation, causing disease, food spoilage, etc.,” Kivlin says. “But, people are often surprised to learn that most microorganisms are beneficial for humans; increasing crop yields, purifying water, and recycling nutrients from dead plants back into soils.”

Because there are more than 1,000,000,000 microorganisms in a scoop of soil, determining exactly where, when, and how microbes perform these beneficial functions is still an open line of research. These questions motivated Kivlin to follow a career in microbial ecology after being trained as a microbiologist. She has since pursued research to connect the function of these tiny organisms (< 0.01mm) to whole ecosystem scale resource dynamics.

Kivlin’s research occurs in locations near and far from Knoxville. She spends her summers assessing microbial response to the 2016 Chimney Tops 2 fire in the Great Smoky Mountains National Park and elevational patterns of microorganisms and the soil resources they affect in the western Colorado Rockies at the Rocky Mountain Biological Laboratory. The rest of year, she models microbial biogeography and ecosystem resource cycling at regional to global scales.

Students participate in a long-term warming experiment at the RMBL collecting fungal endophytes from grass leaves for metabolic analysis.

Students participate in a long-term warming experiment at the RMBL collecting fungal endophytes from grass leaves for metabolic analysis.

Kivlin is especially thrilled to be joining the UT EEB faculty. “I have always valued and encouraged collaborative science. The unique opportunity to collaborate with plant and soil ecologists, mycologists and spatial ecologists in the UT EEB department combined with associations with ecosystem modelers at the Oak Ridge National Lab is the perfect fit for my research program.”

Kivlin’s field site view from Rosy Point, Gothic, Colorado.

Kivlin’s field site view from Rosy Point, Gothic, Colorado.

Kivlin is no stranger to the excellent microbial and ecosystem ecology group already established in the department. To start her lab, Kivlin brought on recent UT EEB PhD graduates Jessica Moore and Leigh Moorhead, with expertise in ecosystem modeling and response to disturbance, as postdoctoral researchers. Moore and Moorhead took advantage of the UT-ORNL connection by conducting their PhD research at ORNL.

“The unique opportunity to collaborate with leading ecosystem experts at ORNL enticed me to select UT for graduate school, and I’m excited to further my ORNL collaborations throughout my post-doc,” Moore says.

“Ecosystem and microbial ecology have always been a strength of the UT EEB department, so I was exceptionally fortunate to attract two postdoctoral researchers whose graduate careers I had been tracking over the last five years,” Kivlin says. “We are all looking forward to building intra- and inter-departmental scientific synergies!”

Filed Under: faculty, newsletter

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